The detailed information of tRNA gene sequence


Sequence ID>A178000510
Genome IDCP009961
Search identical group
Phylum/ClassThermoproteota
SpeciesInfirmifilum uzonense 1807-2 [CP009961]
Start position on genome 11171
End posion on genome 11044
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
tttttgtcag
tRNA gene sequence 
GGGCCCGTAGTCTAGCGGTAGGATGTCGCCCTTGCGCGGCGGAGGTCCCGGGTTCAAATC
CCGGCGGGCCCACCA
Downstream region at tRNA end position 
ggctataatc
Secondary structure (Cloverleaf model)
>A178000510	Ala	TGC
                   g      ACCA ggctataatc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      C     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        T A        G     AGGTC
                    T + G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       G *
                    T G C
intron: position=38, length=53 (in A-loop)
CAGCGAGTCGCGCGGCGAGCACAAGGAATTCGTATATGGGGTTCGCCGGAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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