The detailed information of tRNA gene sequence


Sequence ID>A178000511
Genome IDCP009961
Search identical group
Phylum/ClassThermoproteota
SpeciesInfirmifilum uzonense 1807-2 [CP009961]
Start position on genome 1104307
End posion on genome 1104211
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
taatctctta
tRNA gene sequence 
GCCCCGGTAGCTCAGACTGGTGGAGCGTCGGCCTCGTAAGCCGAAGGTCCCGGGTTCAAA
TCCCGGCCGGGGCTCtg
Downstream region at tRNA end position 
ttggcatggg
Secondary structure (Cloverleaf model)
>A178000511	Thr	CGT
                   a      TCtg ttggcatggg
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      A G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G T G        G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C G T
intron: position=38, length=22 (in A-loop)
AGGTTTACTATAATCTCGGGGT
Intron
Comment/Decision
Genome/Seq. Info.-

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