The detailed information of tRNA gene sequence


Sequence ID>A178000515
Genome IDCP009961
Search identical group
Phylum/ClassThermoproteota
SpeciesInfirmifilum uzonense 1807-2 [CP009961]
Start position on genome 1513034
End posion on genome 1513127
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tatttttcaa
tRNA gene sequence 
GCCGGGGTCGCCTAGCCTGGTCTAGGGCGCCGGACTCATAATCCGGTCTTCCCGGGTTCG
AATCCCGGCCCCGGCACta
Downstream region at tRNA end position 
tatcctacta
Secondary structure (Cloverleaf model)
>A178000515	Met	CAT
                   a      ACta tatcctacta
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        C      | | | | |     G
  T         T C C G       C C G G G     C
  G         + | | |                 T T
  G         G G G C
    T C T A        G     TCTTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=17 (in A-loop)
ATCAACCGGGATGAGCT
Intron
Comment/Decision
Genome/Seq. Info.-

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