The detailed information of tRNA gene sequence


Sequence ID>A178000516
Genome IDCP009961
Search identical group
Phylum/ClassThermoproteota
SpeciesInfirmifilum uzonense 1807-2 [CP009961]
Start position on genome 1550059
End posion on genome 1550161
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
atcaacactg
tRNA gene sequence 
GCGGGGGTGCCCGAGCTAGGACAAAGGGGGCGGACTTAGGCTCCGCTGGCGTCGGCCTGC
CCGGGTTCGAATCCCGGCCCCCGCACCt
Downstream region at tRNA end position 
ctctcattta
Secondary structure (Cloverleaf model)
>A178000516	Leu	TAG
                   g      ACCt ctctcattta
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
    T C G A        G      | | | | |     G
  A         G C C C       C C G G G     C
  G           | | |                 T T
  G         A G G G
    A C A A        G     TGGCGTCGGCCTGC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       C
                  T       G *
                    T A G
intron: position=38, length=16 (in A-loop)
ATCACAGAGATAAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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