The detailed information of tRNA gene sequence


Sequence ID>A178000557
Genome IDCP011097
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrosotenuis cloacae SAT1 [CP011097]
Start position on genome 998778
End posion on genome 998680
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
taattgtggt
tRNA gene sequence 
GCCGGGTTAGCCTAGTGGTACGGCGACCGCCTCGAGAGCGGTTGTGCATTCGCACTCAGG
GGTTCGAATCCCTTACCCGGCGCtc
Downstream region at tRNA end position 
tttttccgat
Secondary structure (Cloverleaf model)
>A178000557	Ser	CGA
                   t      GCtc tttttccgat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A          T A
                    T     T T C C C     A
        G A        A      | + | | |     G
      T     T C C G       A G G G G     C
      G       | | |                 T T
      G     C G G C
        T A        G     TGTGCATTCGCACTC
                    A - T
                    C - G
                    C - G
                    G - C
                    C - G
                  C       A
                  T       G *
                    C G A
intron: position=38, length=16 (in A-loop)
ATCATTCTCACTGGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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