The detailed information of tRNA gene sequence


Sequence ID>A178000566
Genome IDCP012158
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum sp. WP30 [CP012158]
Start position on genome 1434554
End posion on genome 1434456
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
acatctcaca
tRNA gene sequence 
GCCGGGGTGGCCGAGTTGGTCCAAGGCGCGGGCCTGCTAAGCCCGTCCCCGTTCGGGGGC
GTGGGTTCAAATCCCACCCCCGGCGtct
Downstream region at tRNA end position 
accgactctc
Secondary structure (Cloverleaf model)
>A178000566	Ser	GCT
                   a      Gtct accgactctc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    T T G A        G      | | | | |     A
  G         G C C G       G T G G G     C
  G           | | |                 T T
  T         A G G C
    C C A          G     TCCCCGTTCGGGGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    G C T
intron: position=38, length=14 (in A-loop)
AGCCGGGCGCAGCG
Intron
Comment/Decision
Genome/Seq. Info.-

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