The detailed information of tRNA gene sequence


Sequence ID>A178000574
Genome IDCP012172
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula ARS50-1 [CP012172]
Start position on genome 1598641
End posion on genome 1598729
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
gttataacgt
tRNA gene sequence 
GCCGCTGTAGCTCAGCCTGGCCAGAGCGCCGGCCTTGTAAGCCGGCGGTCGCGGGTTCAA
ATCCCGCCAGCGGCTtct
Downstream region at tRNA end position 
agatacttcc
Secondary structure (Cloverleaf model)
>A178000574	Thr	TGT
                   t      Ttct agatacttcc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     C G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       G C G G G     C
  G         | | | |                 T T
  G         G A G C
    C C A          G     CGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T G T
intron: position=38, length=14 (in A-loop)
AGGTTTCCCAAGCC
Intron
Comment/Decision
Genome/Seq. Info.-

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