The detailed information of tRNA gene sequence


Sequence ID>A178000617
Genome IDCP012174
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula ARS120-1 [CP012174]
Start position on genome 2154247
End posion on genome 2154348
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
agataaatgT
tRNA gene sequence 
GCGGGGGTGCCCGAGCTAGGTCAAAGGGGGTAGGCTCAGGCCCTACTGGAGTAGTCCTGC
GCGGGTTCAAATCCCGCCCCCCGCATga
Downstream region at tRNA end position 
tatatacgat
Secondary structure (Cloverleaf model)
>A178000617	Leu	CAG
                   T      ATga tatatacgat
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
    T C G A        G      | | | | |     A
  A         G C C C       G C G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGAGTAGTCCTGC
                    G - C
                    T - A
                    A - T
                    G - C
                    G - C
                  C       C
                  T       G *
                    C A G
intron: position=38, length=15 (in A-loop)
ACCATTAGGTGAGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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