The detailed information of tRNA gene sequence


Sequence ID>A178000659
Genome IDCP012986
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNanohaloarchaea archaeon SG9 [CP012986]
Start position on genome 709447
End posion on genome 709594
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
aatacacaac
tRNA gene sequence 
GCCCCGTTAGCTCAGCTGGTAGAGCACGTCCTTGGTAAGGACGAGGTCCCGGGTTCAAAT
CTCGGACGGGGCTCtg
Downstream region at tRNA end position 
aatcttttcc
Secondary structure (Cloverleaf model)
>A178000659	Thr	GGT
                   c      TCtg aatcttttcc
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     T - A          T A
                    T     G G C T C     A
      C G A        A      | | | + |     A
    T       C T C G       C C G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     AGGTC
                    C - G
                    G - C
                    T - A
                    C - G
                    C - G
                  T       A
                  T       A *
                    G G T
intron: position=38, length=74 (in A-loop)
CGCCTGGTTACGCTCGTGCGGCACGCAAAGACCGGTTCCACCGGCCCCGCCTAAAGCAGAATCAGTTCAC
AAAC
Intron
Comment/Decision
Genome/Seq. Info.-

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