The detailed information of tRNA gene sequence


Sequence ID>A178000660
Genome IDCP012986
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNanohaloarchaea archaeon SG9 [CP012986]
Start position on genome 727326
End posion on genome 727126
Amino Acid Ile
Anticodon TAT
Upstream region at tRNA start position 
atcttcgttg
tRNA gene sequence 
GGTCCACTAGCTCAGTGGTTAGAGCGCCGTCCTTATAAGGCGGTGGTCCCGGGTTCGAGT
CCCGGGTGGACCAtct
Downstream region at tRNA end position 
gtgtattgtg
Secondary structure (Cloverleaf model)
>A178000660	Ile	TAT
                   g      Atct gtgtattgtg
                     G - C
                     G - C
                     T - A
                     C - G
                     C - G
                     A - T
                     C - G          T G
                    T     G G C C C     A
      T G A        A      | | | | |     G
    G       C T C G       C C G G G     C
    G       | | | |                 T T
    T       G A G C
      T A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    T + G
                    C - G
                  C       A
                  T       A *
                    T A T
intron: position=38, length=128 (in A-loop)
CGGACATTCACACAGAAAAAACTTGCCTGAAAAAAGGCCTGTGTGACTGCCTCAACTGCCAGCAGCAGTT
GGCAATACAGACCCGTTTTATCACGGGCTGTGACGAGCTCAGCTCGTCTGCCTAAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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