The detailed information of tRNA gene sequence


Sequence ID>A178000661
Genome IDCP012986
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNanohaloarchaea archaeon SG9 [CP012986]
Start position on genome 993771
End posion on genome 993925
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
cccagaaatg
tRNA gene sequence 
GGGCCGGTAGCTCAGTCTGGCAGAGCACTCGGCTCTTAACCGAGCGGTCGCGGGTTCAAA
TCCCGTCTGGCCCACtc
Downstream region at tRNA end position 
ccagttatgt
Secondary structure (Cloverleaf model)
>A178000661	Lys	CTT
                   g      ACtc ccagttatgt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G + T
                     G - C          T A
                    T     T G C C C     A
      T G A        A      + | | | |     A
    C       C T C G       G C G G G     C
    T       | | | |                 T T
    G       G A G C
      G C A        A     CGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C T T
intron: position=38, length=80 (in A-loop)
ACTGGTTACGCTGAGGTTAACACACAAAAAAGCATTCGACCACACGAATGCTTCAGAAAAACCAAACGTC
CAGCAGAGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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