The detailed information of tRNA gene sequence


Sequence ID>A178000680
Genome IDCP017006
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus sp. A20 [CP017006]
Start position on genome 443413
End posion on genome 443501
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
atatatttgt
tRNA gene sequence 
GGGCCCGTAGCTCAGCTAGGTAGAGCGCTCGGCTCATAACCGAGTGGTCCGGGGTTCAAG
TCCCCGCGGGCCCACCt
Downstream region at tRNA end position 
tgatgccgca
Secondary structure (Cloverleaf model)
>A178000680	Met	CAT
                   t      ACCt tgatgccgca
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G C C C C     A
      C G A        A      | | | | |     A
    T       C T C G       C G G G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=13 (in A-loop)
AGAGCGCTGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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