The detailed information of tRNA gene sequence


Sequence ID>A178000687
Genome IDCP017006
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus sp. A20 [CP017006]
Start position on genome 1000307
End posion on genome 1000405
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
atataacagt
tRNA gene sequence 
GCCGAGGTCGCCTAGCCAGGTAGGGCGGCGGCCTGCTAAGCCGCTGGGGTTAATCCCCGC
GTGGGTTCAAATCCCACCCTCGGCGCat
Downstream region at tRNA end position 
atcatcgaga
Secondary structure (Cloverleaf model)
>A178000687	Ser	GCT
                   t      GCat atcatcgaga
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A C C C     A
      C G A        C      | | | | |     A
    C       T C C G       G T G G G     C
    A       + | | |                 T T
    G       G G G C
      G T A        G     TGGGGTTAATCCCCGC
                    G - C
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    G C T
intron: position=38, length=13 (in A-loop)
ATTTAACGCGGGC
Intron
Comment/Decision
Genome/Seq. Info.-

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