The detailed information of tRNA gene sequence


Sequence ID>A178000697
Genome IDCP019285
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobiforma lacisalsi AJ5 [CP019285]
Start position on genome 2700377
End posion on genome 2700551
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gaaatggcga
tRNA gene sequence 
GGGGTTGTGGCCAAGCCAGGTATGGCGACTGACTCCAGATCAGTCGATCGGGGGTTCAAA
TCCCTCCGACCCCACtg
Downstream region at tRNA end position 
tattttgccg
Secondary structure (Cloverleaf model)
>A178000697	Trp	CCA
                   a      ACtg tattttgccg
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     T + G
                     G - C          T A
                    T     C T C C C     A
      C G A        G      | + | | |     A
    C       A C C G       G G G G G     C
    A       | | | |                 T T
    G       T G G C
      G T A        G     CGATC
                    A - T
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
intron: position=38, length=100 (in A-loop)
AGGCACGCGCCCGGGACGACACTCCAGACTGATATACTGATCGGACGCCTGATCAGCGTCCGTGTGATGA
CCCTCTGGAGTTCCGAGGCGCACCGGAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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