The detailed information of tRNA gene sequence


Sequence ID>A178000707
Genome IDCP020477
Search identical group
Phylum/ClassThermoproteota
SpeciesAcidianus manzaensis YN-25 [CP020477]
Start position on genome 1380442
End posion on genome 1380346
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
tagataaagt
tRNA gene sequence 
GCCGAGGTCGCCTAGCCAGGTAGGGCGGCGGCCTGCTAAGCCGTTGGGGGAAACCCCGCA
CGGGTTCAAATCCCGTCCTCGGCGCta
Downstream region at tRNA end position 
ttgctcacaa
Secondary structure (Cloverleaf model)
>A178000707	Ser	GCT
                   t      GCta ttgctcacaa
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     T G C C C     A
      C G A        C      | | | | |     A
    C       T C C G       A C G G G     C
    A       + | | |                 T T
    G       G G G C
      G T A        G     TGGGGGAAACCCCGC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    G C T
intron: position=38, length=12 (in A-loop)
CTGCATGCAGGC
Intron
Comment/Decision
Genome/Seq. Info.-

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