The detailed information of tRNA gene sequence


Sequence ID>A178000709
Genome IDCP020477
Search identical group
Phylum/ClassThermoproteota
SpeciesAcidianus manzaensis YN-25 [CP020477]
Start position on genome 1505139
End posion on genome 1505049
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
aataattaat
tRNA gene sequence 
GCCGCTGTAGCTCAGCTGGTAGAGCGCCGGCCTCGTAAGCCGGCGGTCGCGGGTCCGAGT
CCCGCCAGCGGCTgat
Downstream region at tRNA end position 
ggtgaatata
Secondary structure (Cloverleaf model)
>A178000709	Thr	CGT
                   t      Tgat ggtgaatata
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     T - A
                     G - C          T G
                    T     C G C C C     A
      C G A        A      | | | | |     G
    T       C T C G       G C G G G     C
    G       | | | |                 T C
    G       G A G C
      T A          G     CGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C G T
intron: position=38, length=18 (in A-loop)
AGGCTAGGTGTCAGTGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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