The detailed information of tRNA gene sequence


Sequence ID>A178000722
Genome IDFR746099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi C23 DSM 16854 [FR746099]
Start position on genome 2180936
End posion on genome 2181088
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ttttatttgc
tRNA gene sequence 
GCCCGGGTGGCTTAGTTGGACATAGCGCCGCACTCATAATGCGGAGATCGTGGGTTCGGA
GCCCACCCCGGGCAtgc
Downstream region at tRNA end position 
attcttttca
Secondary structure (Cloverleaf model)
>A178000722	Met	CAT
                   c      Atgc attcttttca
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          G A
                    T     C A C C C     G
      T G A        G      | | | | |     G
    T       T T C G       G T G G G     C
    G         | | |                 T T
    G       T A G C
      A C A        G     AGATC
                    C - G
                    C - G
                    G - C
                    C - G
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=79 (in A-loop)
GGGTTTCCTGAGATTCGGTGCGGATTGCCTTGGAAGCCTCCGTTGCCCTACGGGGCCCGCCGAGCCTCGG
ACCTGGGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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