The detailed information of tRNA gene sequence


Sequence ID>A178000725
Genome IDHF571520
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
Start position on genome 2534911
End posion on genome 2534737
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gaatatccgc
tRNA gene sequence 
GGGGTCGTGGCCAAGTCCGGCATGGCGACTGACTCCAGATCAGTCGATCGGGGGTTCAAA
TCCCTCCGACCCCAttg
Downstream region at tRNA end position 
ggattattaa
Secondary structure (Cloverleaf model)
>A178000725	Trp	CCA
                   c      Attg ggattattaa
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     C T C C C     A
      T G A        G      | + | | |     A
    C       A C C G       G G G G G     C
    C       | | | |                 T T
    G       T G G C
      G C A        G     CGATC
                    A - T
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
intron: position=38, length=101 (in A-loop)
AGGCACGCGCCCGGGACGACACTCCAGACTGATATACTGAGCGACCGGCTGATCACCGTCGCACTGATGA
CCCTCTGGAGTTCCGAGGCGCTACCGGAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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