The detailed information of tRNA gene sequence


Sequence ID>A178000738
Genome IDLN890280
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrosotalea devanaterra [LN890280]
Start position on genome 651964
End posion on genome 652059
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
cttgtcaagt
tRNA gene sequence 
GCTAGGTTAGCCAAGTGGAACGGCGACCGCCTCGAGAGCGGTTATGCGCAAGCATGCAGG
GGTTCGAATCCCTTACCTAGCGCtt
Downstream region at tRNA end position 
ttcaaatatc
Secondary structure (Cloverleaf model)
>A178000738	Ser	CGA
                   t      GCtt ttcaaatatc
                     G - C
                     C - G
                     T - A
                     A - T
                     G - C
                     G - C
                     T - A          T A
                    T     T T C C C     A
        G A        A      | + | | |     G
      T     A C C G       A G G G G     C
      G       | | |                 T T
      G     C G G C
        A A        G     TATGCGCAAGCATGC
                    A - T
                    C - G
                    C - G
                    G - C
                    C - G
                  C       A
                  T       G *
                    C G A
intron: position=38, length=13 (in A-loop)
ATCAAAACAAGGT
Intron
Comment/Decision
Genome/Seq. Info.-

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