The detailed information of tRNA gene sequence


Sequence ID>A179000002
Genome IDAP011532
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella paludicola SANAE [AP011532]
Start position on genome 2214515
End posion on genome 2214627
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
ttctcgaaat
tRNA gene sequence 
GCCGAGGTAGTCTAGTGGTAAGGCGCAAGCCTGGAAAGCTTGTGGGGGGAAACTCCCGCA
AGGGTTCGAGTCCCTTCCTCGGCGcct
Downstream region at tRNA end position 
acattttttc
Secondary structure (Cloverleaf model)
>A179000002	Ser	GGA
                   t      Gcct acattttttc
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T G
                    T     T T C C C     A
        G A        A      | | | | |     G
      T     T C T G       A A G G G     C
      G     | | + |                 T T
      G     A G G C
        T A        G     TGGGGGGAAACTCCCGC
                    C - G
                    A - T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A *
                    G G A
intron: position=38, length=29 (in A-loop)
TTTTTCTCTAATAGCGAGAAAGACCAGTG
Intron
Comment/Decision
Genome/Seq. Info.-

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