The detailed information of tRNA gene sequence


Sequence ID>A179000005
Genome IDAP012489
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum camini SY1 = JCM 12091 [AP012489]
Start position on genome 343301
End posion on genome 343178
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
aggctaaggt
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGCCCAAGGCGGCGGGCTCGAGACCCGTTGCCCCAGGAGGGGCG
CGCGGGTTCGAATCCCGCCCCCGGCGCCA
Downstream region at tRNA end position 
gcattgtggg
Secondary structure (Cloverleaf model)
>A179000005	Ser	CGA
                   t      GCCA gcattgtggg
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G C C G       G C G G G     C
    G         | | |                 T T
    C       A G G C
      C C A        G     TGCCCCAGGAGGGGCGC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C G A
intron: position=38, length=35 (in A-loop)
GTCGGCACAGGGGTTTCCGCGCCGCCGCACGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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