The detailed information of tRNA gene sequence


Sequence ID>A179000025
Genome IDCP000968
Search identical group
Phylum/ClassUnclassified
SpeciesCandidatus Korarchaeum cryptofilum OPF8 [CP000968]
Start position on genome 1270744
End posion on genome 1270847
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
agaagcaaga
tRNA gene sequence 
GCCGGGGTAGCTCAGCCTGGTTTGAGCGCCGGACTCATAATCCGGAGGTCCCGGGTTCAA
ATCCCGGCCCCGGCAtaa
Downstream region at tRNA end position 
acattattac
Secondary structure (Cloverleaf model)
>A179000025	Met	CAT
                   a      Ataa acattattac
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T T T          G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=29 (in A-loop)
AGTGGGCAGGGCCCCGGCGCCGCTGGGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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