The detailed information of tRNA gene sequence


Sequence ID>A179000030
Genome IDCP001014
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum neutrophilum V24Sta [CP001014]
Start position on genome 1468775
End posion on genome 1468870
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
ctaggtcgca
tRNA gene sequence 
GGGCCCGTAGCTCAGCCTGGTAGAGCGGCGGGCTCTTAACCCGTAGGTCGTGGGTTCGAA
TCCCACCGGGCCCGcta
Downstream region at tRNA end position 
agttttagcg
Secondary structure (Cloverleaf model)
>A179000030	Lys	CTT
                   a      Gcta agttttagcg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
      C G A        A      | | | | |     G
    C       C T C G       G T G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    C T T
intron: position=38, length=22 (in A-loop)
GGGGCGGTTGCCGCCCGTGGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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