The detailed information of tRNA gene sequence


Sequence ID>A179000047
Genome IDCP001140
Search identical group
Phylum/ClassThermoproteota
SpeciesDesulfurococcus amylolyticus 1221n [CP001140]
Start position on genome 973940
End posion on genome 973841
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
ctcgaacgtg
tRNA gene sequence 
GCCCGGGTAGCTCAGCCTGGATAGAGCGCCGGGCTGTGGACCCGGAGGTCCCGGGTTCAA
ATCCCGGCCCGGGCCctt
Downstream region at tRNA end position 
tccaatagcc
Secondary structure (Cloverleaf model)
>A179000047	His	GTG
                   g      Cctt tccaatagcc
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T G
intron: position=38, length=25 (in A-loop)
ACCCCTCGAGATGAGGAGGGTGGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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