The detailed information of tRNA gene sequence


Sequence ID>A179000097
Genome IDCP001696
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus fervens AG86 [CP001696]
Start position on genome 365482
End posion on genome 365372
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
atattgatgc
tRNA gene sequence 
GGGGGTGTGGTGTAGCCAGGTCTATCATCGGGGACTCCAGATCCCTGGACCTGGGTTCAA
ATCCCAGCACCCCCACCA
Downstream region at tRNA end position 
ttttttacca
Secondary structure (Cloverleaf model)
>A179000097	Trp	CCA
                   c      ACCA ttttttacca
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C          T A
                    T     G A C C C     A
    C C G A        G      | | | | |     A
  A         T G T G       C T G G G     C
  G           | | +                 T T
  G         T C A T
    T C T A        C     GGAC
                    G + T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
intron: position=38, length=33 (in A-loop)
TTGCCTATAGGGCGCTGGACCACGGCAGGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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