The detailed information of tRNA gene sequence


Sequence ID>A179000107
Genome IDCP001787
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus vulcanius M7 [CP001787]
Start position on genome 325431
End posion on genome 325538
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ggtattgcat
tRNA gene sequence 
GCCGAGGTGGCTTAGCGGGTTATAGCGCCCGGCTCATAACCGGGAGGTCGAGGGTTCGAA
TCCCTCCCTCGGCActa
Downstream region at tRNA end position 
tttatactat
Secondary structure (Cloverleaf model)
>A179000107	Met	CAT
                   t      Acta tttatactat
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C C C     A
      C G A        G      | | | | |     G
    G       T T C G       G A G G G     C
    G         | | |                 T T
    G       T A G C
      T T A        G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=34 (in A-loop)
CGGACATCCCAGCTGCAAAGCTGGGTCCTGGGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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