The detailed information of tRNA gene sequence


Sequence ID>A179000114
Genome IDCP001800
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus [CP001800]
Start position on genome 1112162
End posion on genome 1112060
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ggggtaaagt
tRNA gene sequence 
AGCGGGGTGGGCTAGCCTGGTAAGGCCGCGGGGCTCATAACCCCGAGGTCCCTGGTTCAA
ATCCAGGCCCCGCTACCA
Downstream region at tRNA end position 
tattatttct
Secondary structure (Cloverleaf model)
>A179000114	Met	CAT
                   t      ACCA tattatttct
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G A C C     A
    C C G A        G      | | | | |     A
  T         T C G G       C C T G G     C
  G         + | | |                 T T
  G         G G C C
    T A A          G     AGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=25 (in A-loop)
TACTCTTTAAAGCACGCGTTGGGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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