The detailed information of tRNA gene sequence


Sequence ID>A179000115
Genome IDCP001857
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus profundus DSM 5631 [CP001857]
Start position on genome 747270
End posion on genome 747404
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tgacttgagt
tRNA gene sequence 
GGGGTCGTGGCGTAGCCAGGAAGCGCGGCGGGCTCCAGACCCGCTGGTCGTGGGTTCAAA
TCCCACCGGCCCCActc
Downstream region at tRNA end position 
ccccgtctaa
Secondary structure (Cloverleaf model)
>A179000115	Trp	CCA
                   t      Actc ccccgtctaa
                     G - C
                     G - C
                     G - C
                     G - C
                     T + G
                     C - G
                     G - C          T A
                    T     C A C C C     A
      C G A        G      | | | | |     A
    C       T G C G       G T G G G     C
    A       + | | |                 T T
    G       G C G C
      G A A        G     TGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=61 (in A-loop)
CGGTGTGATGACCAATGGGTCTGCTGAAGTGTGATGACCCGTTGGAGCTCTGACCGAAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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