The detailed information of tRNA gene sequence


Sequence ID>A179000116
Genome IDCP001857
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus profundus DSM 5631 [CP001857]
Start position on genome 237348
End posion on genome 237257
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
atccagtagt
tRNA gene sequence 
CCCGGCTTAGCTCAGTCTGGCAGAGCGCGGGCCTGTAGAGCCCGGGGTCCCCGGTTCAAA
TCCGGGAGCCGGGActc
Downstream region at tRNA end position 
cttacttcta
Secondary structure (Cloverleaf model)
>A179000116	Tyr	GTA
                   t      Actc cttacttcta
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     C - G
                     T - A          T A
                    T     G G G C C     A
      T G A        A      | | | | |     A
    C       C T C G       C C C G G     C
    T       | | | |                 T T
    G       G A G C
      G C A        G     GGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    G T A
intron: position=38, length=18 (in A-loop)
TCTGGCGACCGGGCAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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