The detailed information of tRNA gene sequence


Sequence ID>A179000143
Genome IDCP001941
Search identical group
Phylum/ClassUnclassified
SpeciesAciduliprofundum boonei T469 [CP001941]
Start position on genome 604937
End posion on genome 604831
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aatttttggt
tRNA gene sequence 
GCCGGGGTGGCTCAGCCTGGTGGAGCGTCGGACTCATAATCCGAAGGTCCCGGGTTCAAA
CCCCGGCCCCGGCAtta
Downstream region at tRNA end position 
cagcataaat
Secondary structure (Cloverleaf model)
>A179000143	Met	CAT
                   t      Atta cagcataaat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          C A
                    T     G G C C C     A
      C G A        G      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G T G        G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=33 (in A-loop)
GGGTATATTAATCTCCACCTCCAAGCCTGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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