The detailed information of tRNA gene sequence


Sequence ID>A179000161
Genome IDCP002051
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus hellenicus DSM 12710 [CP002051]
Start position on genome 1275854
End posion on genome 1275730
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
aatatgaaga
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGTCTAAGGCGGCGGGCTGCAGACCCGCTTTATCGCGGGTTCGA
ATCCCGCCCCCGGCTCCA
Downstream region at tRNA end position 
catcctcata
Secondary structure (Cloverleaf model)
>A179000161	Cys	GCA
                   a      TCCA catcctcata
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G C C G       G C G G G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TTTATC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    G C A
intron: position=38, length=47 (in A-loop)
GGCCCATAATCTATAACAAACCATACCCTGTAAGGGGGTTCACGGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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