The detailed information of tRNA gene sequence


Sequence ID>A179000170
Genome IDCP002098
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnisphaera aggregans DSM 17230 [CP002098]
Start position on genome 1739331
End posion on genome 1739424
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
tctattagag
tRNA gene sequence 
CCCGCCGTAGCTCAGCGGCAGAGCGCCCGGCTGTAGACCGGGTGGTCGGGGGTTCAAGTC
CCCCCGGCGGGActa
Downstream region at tRNA end position 
ataattcatt
Secondary structure (Cloverleaf model)
>A179000170	Tyr	GTA
                   g      Acta ataattcatt
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T G
                    T     C C C C C     A
        G A        A      | | | | |     A
      C     C T C G       G G G G G     C
      G     | | | |                 T T
      G     G A G C
        C A        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
intron: position=38, length=22 (in A-loop)
TGAGGCGGGCGCCTATATAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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