The detailed information of tRNA gene sequence


Sequence ID>A179000184
Genome IDCP002100
Search identical group
Phylum/ClassThermoproteota
SpeciesVulcanisaeta distributa DSM 14429 [CP002100]
Start position on genome 1360176
End posion on genome 1360069
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
ttgttggttt
tRNA gene sequence 
GCCGGGGTGGCCGAGCCAGGTCCAAGGCGCGGGCCTGGAGAGTCCGTCCCCGCAAGGGGG
CCCGGGTTCAAATCCCGGCCCCGGCACCA
Downstream region at tRNA end position 
acacggtcat
Secondary structure (Cloverleaf model)
>A179000184	Ser	GGA
                   t      ACCA acacggtcat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  A         G C C G       C C G G G     C
  G           | | |                 T T
  G         A G G C
    T C C A        G     TCCCCGCAAGGGGGC
                    C - G
                    G - C
                    G - C
                    G + T
                    C - G
                  C       A
                  T       G *
                    G G A
intron: position=38, length=19 (in A-loop)
ATTCCGCAGGGAACCTTAA
Intron
Comment/Decision
Genome/Seq. Info.-

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