The detailed information of tRNA gene sequence


Sequence ID>A179000193
Genome IDCP002278
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermus fervidus DSM 2088 [CP002278]
Start position on genome 342134
End posion on genome 342228
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
gaaattagta
tRNA gene sequence 
GCCGGGGTGGCTCAGCTGGTTAGAGCGCACGGCTCATAACCGTGAGGTCGCGGGTTCAAA
TCCCGCCCCCGGCAtca
Downstream region at tRNA end position 
tttatttttc
Secondary structure (Cloverleaf model)
>A179000193	Met	CAT
                   a      Atca tttatttttc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    T       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTC
                    C - G
                    A - T
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=21 (in A-loop)
GGGCTTGGCTGAGCCTGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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