The detailed information of tRNA gene sequence


Sequence ID>A179000201
Genome IDCP002363
Search identical group
Phylum/ClassThermoproteota
SpeciesDesulfurococcus mucosus DSM 2162 [CP002363]
Start position on genome 1180105
End posion on genome 1180000
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
gaataatggt
tRNA gene sequence 
GGGCCGGTAGCTCAGCCTGGAAGAGCGCCGCCCTTGCAAGGCGGAGGTCCCGGGTTCAAG
TCCCGGCCGGTCCActa
Downstream region at tRNA end position 
atcctcccat
Secondary structure (Cloverleaf model)
>A179000201	Ala	TGC
                   t      Acta atcctcccat
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T G
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G A A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A *
                    T G C
intron: position=38, length=32 (in A-loop)
TGGCCTCTCCAGGCTTCACCGAGGTCGAGGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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