The detailed information of tRNA gene sequence


Sequence ID>A179000239
Genome IDCP002565
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix soehngenii GP6 [CP002565]
Start position on genome 2483890
End posion on genome 2484006
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
atgagggcgt
tRNA gene sequence 
GCTGAGGTAGCCAAGCGGCCTACGGCGCTGGTCTTGAGAACCAGTGGTGCATCGCACCTC
GTGAGTTCAAATCTCACCCTCAGCGctt
Downstream region at tRNA end position 
gggctcctgc
Secondary structure (Cloverleaf model)
>A179000239	Ser	TGA
                   t      Gctt gggctcctgc
                     G - C
                     C - G
                     T - A
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A C T C     A
      C G A        A      | | | | |     A
    G       A C C G       G T G A G     C
    G         | | |                 T T
    C       C G G C
      C T A        G     TGGTGCATCGCACCTC
                    C - G
                    T - A
                    G - C
                    G - C
                    T - A
                  C       A
                  T       G *
                    T G A
intron: position=38, length=32 (in A-loop)
CTTTCGTCCTCCTCCAGAGGGCGGAACGGGCA
Intron
Comment/Decision
Genome/Seq. Info.-

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