The detailed information of tRNA gene sequence


Sequence ID>A179000249
Genome IDCP002590
Search identical group
Phylum/ClassThermoproteota
SpeciesThermoproteus uzoniensis 768-20 [CP002590]
Start position on genome 1666174
End posion on genome 1666271
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
gcggagttcg
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGCCCAAGGCGCGGGCCTGGAGAGTCCGTCCCCGCAAGGGGGCG
TGGGTTCAAATCCCACCCCCGGCGCCA
Downstream region at tRNA end position 
ttcttctctt
Secondary structure (Cloverleaf model)
>A179000249	Ser	GGA
                   g      GCCA ttcttctctt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
      C G A        G      | | | | |     A
    G       G C C G       G T G G G     C
    G         | | |                 T T
    C       A G G C
      C C A        G     TCCCCGCAAGGGGGC
                    C - G
                    G - C
                    G - C
                    G + T
                    C - G
                  C       A
                  T       G *
                    G G A
intron: position=38, length=11 (in A-loop)
TAGGCCCAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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