The detailed information of tRNA gene sequence


Sequence ID>A179000258
Genome IDCP002656
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera cuprina Ar-4 [CP002656]
Start position on genome 16784
End posion on genome 16869
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
atcttttagt
tRNA gene sequence 
GCCGCTGTAGCTCAGCTGGTAGAGCGCCGGCCTCGTAAGCCGGTGGTCGCGGGTTCAAAT
CCCGCCGGCGGCTcgt
Downstream region at tRNA end position 
ggtgattact
Secondary structure (Cloverleaf model)
>A179000258	Thr	CGT
                   t      Tcgt ggtgattact
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     T + G
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     A
    T       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C G T
intron: position=38, length=13 (in A-loop)
CTTAAGTAGGGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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