The detailed information of tRNA gene sequence


Sequence ID>A179000269
Genome IDCP002772
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobacterium paludis SWAN1 [CP002772]
Start position on genome 1781622
End posion on genome 1781478
Amino Acid Pseudo
Anticodon GTA
Upstream region at tRNA start position 
ttaattttta
tRNA gene sequence 
CGAGGCATGAGTCAGTGGTTGACTGCTCGGCTGTAGACCGAGTTTAGGTGAGTTCAATTC
TCACTGTCTCGAttt
Downstream region at tRNA end position 
atttatgagc
Secondary structure (Cloverleaf model)
>A179000269	Pseudo	GTA
                   a      Attt atttatgagc
                     C - G
                     G - C
                     A - T
                     G - C
                     G + T
                     C - G
                     A - T          T T
                    T     C A C T C     A
        G A        G      | | | | |     A
      T     C T G A       G T G A G     C
      G     | | | |                 T T
      G     G A C T
        T T        G     TTTAG
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
intron: position=38, length=73 (in A-loop)
AGTGGTTGTAATCCTTTGATTAGGAACGTAGGTACCTGCGAGAAAATCCATTTCGATGGGCAACCATACA
GAT
Intron
Comment/Decision
Genome/Seq. Info.-

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