The detailed information of tRNA gene sequence


Sequence ID>A179000271
Genome IDCP002779
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus yayanosii CH1 [CP002779]
Start position on genome 890973
End posion on genome 890825
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tagaacgagt
tRNA gene sequence 
GGGGGCGTGGTGTAGCCTGGTCCATCATCGCGGGCTCCAGACCCGCGGACCGGGGTTCAA
ATCCCCGCGCCCCCACCA
Downstream region at tRNA end position 
tccttcactc
Secondary structure (Cloverleaf model)
>A179000271	Trp	CCA
                   t      ACCA tccttcactc
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        G      | | | | |     A
  T         T G T G       C G G G G     C
  G           | | +                 T T
  G         T C A T
    T C C A        C     GGAC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=71 (in A-loop)
AGGCCATGAGGACAGGCGGGTTTGCTGACCTCGGGGCGTGATGAACCTTTGGAGCCCCGAGGGCCGGAGA
A
Intron
Comment/Decision
Genome/Seq. Info.-

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