The detailed information of tRNA gene sequence


Sequence ID>A179000272
Genome IDCP002792
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermococcus okinawensis IH1 [CP002792]
Start position on genome 981082
End posion on genome 980965
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aattaacagt
tRNA gene sequence 
GCCGAGGTGGCTTAGGCTGGTTATAGCGCTCGGCTCATAACCGAGAGGTCGGGGGTTCGA
GTCCCCCCCTCGGCAttt
Downstream region at tRNA end position 
tttataggtc
Secondary structure (Cloverleaf model)
>A179000272	Met	CAT
                   t      Attt tttataggtc
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T G
                    T     C C C C C     A
    C G G A        G      | | | | |     G
  T         T T C G       G G G G G     C
  G           | | |                 T T
  G         T A G C
    T T A          G     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=43 (in A-loop)
CGGATATTCCCAAGGAGCAAATACTCTCCTTGGGTCCTGGGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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