The detailed information of tRNA gene sequence


Sequence ID>A179000296
Genome IDCP002916
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasmatales archaeon BRNA1 [CP002916]
Start position on genome 259490
End posion on genome 259379
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
tcagttaagt
tRNA gene sequence 
CCCCATTTAGCTCAGACTGGCTAGAGCGGCTGACTGTAGATCAGCAGGCCCCCTGTTCAA
ATCAGGGAATGGGGACCA
Downstream region at tRNA end position 
cttccttcta
Secondary structure (Cloverleaf model)
>A179000296	Tyr	GTA
                   t      ACCA cttccttcta
                     C - G
                     C - G
                     C - G
                     C - G
                     A - T
                     T - A
                     T - A          T A
                    T     G G G A C     A
    C A G A        A      | | | | |     A
  T         C T C G       C C C T G     C
  G         | | | |                 T T
  G         G A G C
    C T A          G     AGGCC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G *
                    G T A
intron: position=38, length=34 (in A-loop)
AGTGTTCTCGGAGAGATCCGATACAGCCGCTGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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