The detailed information of tRNA gene sequence


Sequence ID>A179000298
Genome IDCP002920
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus sp. 4557 [CP002920]
Start position on genome 1507424
End posion on genome 1507284
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
taagctggac
tRNA gene sequence 
GGGGGCATGGTGTAGCCTGGTCCATCATCGCGGGCTCCAGACCCGCGGACCGGGGTTCAA
ATCCCCGTGCCCCCACCA
Downstream region at tRNA end position 
ttaaaacttt
Secondary structure (Cloverleaf model)
>A179000298	Trp	CCA
                   c      ACCA ttaaaacttt
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     A - T          T A
                    T     G C C C C     A
    C C G A        G      | | | | |     A
  T         T G T G       C G G G G     C
  G           | | +                 T T
  G         T C A T
    T C C A        C     GGAC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=63 (in A-loop)
AGGTATGAGGACTTGCGGGTTTGCTGATTTGGGGATGAGCCTTTGGAGCTCTGACCCGGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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