The detailed information of tRNA gene sequence


Sequence ID>A179000312
Genome IDCP003098
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum ferrireducens 1860 [CP003098]
Start position on genome 1282355
End posion on genome 1282450
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
tccgggggag
tRNA gene sequence 
GCCCCGGTAGCTCAGCCTGGTGGAGCGCCTCACTGGTACTGAGGAGGTCCCGGGTTCGAA
TCCCGGCCGGGGCTCCA
Downstream region at tRNA end position 
tgtagatttc
Secondary structure (Cloverleaf model)
>A179000312	Thr	GGT
                   g      TCCA tgtagatttc
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     G
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G T G        G     AGGTC
                    C - G
                    C - G
                    T - A
                    C - G
                    A - T
                  C       C
                  T       A *
                    G G T
intron: position=38, length=19 (in A-loop)
AAGGCCTCCGGGCTACCGA
Intron
Comment/Decision
Genome/Seq. Info.-

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