The detailed information of tRNA gene sequence


Sequence ID>A179000323
Genome IDCP003098
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum ferrireducens 1860 [CP003098]
Start position on genome 1069228
End posion on genome 1069130
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
gagaagcaca
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGCCCAAGGCGCGGGACTGGAGATCCCGTCCCCGTCAAGGGGGC
CCGGGTTCAAATCCCGGCCCCGGCGcct
Downstream region at tRNA end position 
tgattctcac
Secondary structure (Cloverleaf model)
>A179000323	Ser	GGA
                   a      Gcct tgattctcac
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     A
    G       G C C G       C C G G G     C
    G         | | |                 T T
    C       A G G C
      C C A        G     TCCCCGTCAAGGGGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    G G A
intron: position=38, length=14 (in A-loop)
ACACCGCGCCAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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