The detailed information of tRNA gene sequence


Sequence ID>A179000332
Genome IDCP003117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix harundinacea 6Ac [CP003117]
Start position on genome 1562625
End posion on genome 1562500
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
agaggcgcgg
tRNA gene sequence 
GCTGAGGTAGCCAAGCGGCCCACGGCGCCGGTCTTGAAAACCGGTGGCGCTCACGCGCCT
CGTGAGTTCAAATCTCACCCTCAGCGCCA
Downstream region at tRNA end position 
aaattttcct
Secondary structure (Cloverleaf model)
>A179000332	Ser	TGA
                   g      GCCA aaattttcct
                     G - C
                     C - G
                     T - A
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A C T C     A
      C G A        A      | | | | |     A
    G       A C C G       G T G A G     C
    G         | | |                 T T
    C       C G G C
      C C A        G     TGGCGCTCACGCGCCTC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A *
                    T G A
intron: position=38, length=37 (in A-loop)
CTCGGACCATCGGCGAAAGCGAGCGGTCCGACGGGGG
Intron
Comment/Decision
Genome/Seq. Info.-

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