The detailed information of tRNA gene sequence


Sequence ID>A179000340
Genome IDCP003168
Search identical group
Phylum/ClassUnclassified
SpeciesAciduliprofundum sp. MAR08-339 [CP003168]
Start position on genome 1084225
End posion on genome 1084362
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
ccgtaattgc
tRNA gene sequence 
GGGGGCATGGGGTAGTCAGGCATCCTGGTGGGCTCCAGACCCGCGGACCTGGGTTCGAAT
CCCAGTGCCCCCActt
Downstream region at tRNA end position 
cctggtaaac
Secondary structure (Cloverleaf model)
>A179000340	Trp	CCA
                   c      Actt cctggtaaac
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     A - T          T A
                    T     G A C C C     A
      T G A        G      | | | | |     G
    C       T G G G       C T G G G     C
    A         | | +                 T T
    G       T C C T
      G C A        G     GGAC
                    G - C
                    T + G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=65 (in A-loop)
TTAGATGATGACAAGCGGGTCAGCTGAAAAATGATGAGTAACTGGAGCGCTGACCCACAGGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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