The detailed information of tRNA gene sequence


Sequence ID>A179000342
Genome IDCP003243
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella conradii HZ254 [CP003243]
Start position on genome 2200384
End posion on genome 2200175
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
agcgttgtgt
tRNA gene sequence 
GGGGCTGTGGCCAAGCCAGGAATGGCGACGGGCTCCAGACCCGTCGATCAGGGGTTCAAA
TCCCTTCAGCCCCAcat
Downstream region at tRNA end position 
tttatgatat
Secondary structure (Cloverleaf model)
>A179000342	Trp	CCA
                   t      Acat tttatgatat
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     T T C C C     A
      C G A        G      | + | | |     A
    C       A C C G       A G G G G     C
    A       | | | |                 T T
    G       T G G C
      G A A        G     CGATC
                    A - T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=136 (in A-loop)
CGGTGGTAAGCCCTAACGGGCTTTTGGAATGTGATGAGCAACGGGTCTGCTGAGGCCGCTCGACGGAGTG
GCTTGTGAGGAGCCGTTGGAGCGCTGATTTGAGTGCTCTCGGGTGTAATTCCCAATCATCGGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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