The detailed information of tRNA gene sequence


Sequence ID>A179000353
Genome IDCP003316
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum oguniense TE7 [CP003316]
Start position on genome 314649
End posion on genome 314552
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
aaagaacaca
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGCCCAAGGCGCGGGACTGGAGATCCCGTCCCCGTTCAGGGGGC
CCGGGTTCAAATCCCGGCCCCGGCGcct
Downstream region at tRNA end position 
ttctccatca
Secondary structure (Cloverleaf model)
>A179000353	Ser	GGA
                   a      Gcct ttctccatca
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     A
    G       G C C G       C C G G G     C
    G         | | |                 T T
    C       A G G C
      C C A        G     TCCCCGTTCAGGGGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    G G A
intron: position=38, length=13 (in A-loop)
ACAAAAGCGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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