The detailed information of tRNA gene sequence


Sequence ID>A179000372
Genome IDCP003378
Search identical group
Phylum/ClassThermoproteota
SpeciesCaldisphaera lagunensis DSM 15908 [CP003378]
Start position on genome 672028
End posion on genome 672127
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
atcataacgg
tRNA gene sequence 
GCCGCCGTAGCTCAGTAGGTAGAGCGCTGGCCTCGTAAGCCAGCGGTCGCGGGTTCAAGT
CCCGCCGGCGGCTtta
Downstream region at tRNA end position 
taaagatttt
Secondary structure (Cloverleaf model)
>A179000372	Thr	CGT
                   g      Ttta taaagatttt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T G
                    T     C G C C C     A
      T G A        A      | | | | |     A
    A       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     CGGTC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C G T
intron: position=38, length=27 (in A-loop)
TGTAAAATAAACCGAAATCGCTGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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